JavaScript is disabled on your browser.
Package
Class
Use
Tree
Deprecated
Index
Help
Prev Letter
Next Letter
Frames
No Frames
All Classes
A
B
C
D
E
F
G
H
I
L
M
N
O
Q
R
S
T
U
C
calculateTargetCoverageFromGCcontent(double)
- Static method in class artificialFastqGenerator.
ArtificialFastqGenerationUtils
Deprecated.
captureProbeLength
- Static variable in class artificialFastqGenerator.
Main
coverageBasedOnGCcontent
- Static variable in class artificialFastqGenerator.
Main
coverageMeanGCcontentSpread
- Static variable in class artificialFastqGenerator.
Main
coverageMeanPeak
- Static variable in class artificialFastqGenerator.
Main
coverageMeanPeakGCcontent
- Static variable in class artificialFastqGenerator.
Main
coverageSD
- Static variable in class artificialFastqGenerator.
Main
CoverageStatisticsCalculator
- Class in
artificialFastqGenerator
Instances of this class calculate regional and overall coverage statistics for nucleobases.
CoverageStatisticsCalculator()
- Constructor for class artificialFastqGenerator.
CoverageStatisticsCalculator
Initialise a new CoverageStatisticsCalculator object.
createChromosomeArray()
- Static method in class artificialFastqGenerator.
Genomes
Create an array of chromosome header strings.
createNucleobase(char)
- Method in class artificialFastqGenerator.
NucleobaseAndReadFactory
Create a Nucleobase object.
createPairedEndReads(ArrayList<Nucleobase>, ArrayList<Nucleobase>)
- Method in class artificialFastqGenerator.
NucleobaseAndReadFactory
Create a pair of reads.
createSequence(int, int)
- Method in class artificialFastqGenerator.
ArtificialFastqGenerator.BabyRead
A
B
C
D
E
F
G
H
I
L
M
N
O
Q
R
S
T
U
Package
Class
Use
Tree
Deprecated
Index
Help
Prev Letter
Next Letter
Frames
No Frames
All Classes